This documentation is not for the latest stable Salvus version.
import os
import numpy as np
import xarray as xr
import salvus.namespace as sn
from salvus.mesh.tools.transforms import interpolate_mesh_to_mesh
# Run simulations on this site.
SALVUS_FLOW_SITE_NAME = os.environ.get("SITE_NAME", "local")
# Gaussian
x, y = np.linspace(0.0, 1.0, 100), np.linspace(0.0, 1.0, 100)
xx, yy = np.meshgrid(x, y, indexing="xy")
g = np.exp(-(((xx - 0.5) ** 2 + (yy - 0.5) ** 2) / (2 * 0.2**2)))
# Pars
vp = 2 * g + 1
rho = vp / 2
# Xarray dataset
ds = xr.Dataset(
coords={"x": x, "y": y},
data_vars={"vp": (["x", "y"], vp), "rho": (["x", "y"], rho)},
)
# Salvus wrapper.
m = sn.model.volume.cartesian.GenericModel(name="blob", data=ds)
# Plot
m.ds.vp.plot()
<matplotlib.collections.QuadMesh at 0x7fb49266b610>
p = sn.Project.from_volume_model("proj_2d", m, True)
s = sn.simple_config.source.cartesian.ScalarPoint2D(x=0.25, y=0.25, f=1.0)
r = sn.simple_config.receiver.cartesian.Point2D(
x=0.75, y=0.75, fields=["phi"], station_code="XX", network_code="XX"
)
p.add_to_project(sn.EventCollection.from_sources(sources=s, receivers=r))
f_max = 10.0
# Common event configuration.
ec = sn.EventConfiguration(
wavelet=sn.simple_config.stf.Ricker(center_frequency=f_max / 2),
waveform_simulation_configuration=sn.WaveformSimulationConfiguration(
end_time_in_seconds=1.0
),
)
# Heterogeneous - meshed at f_max.
s0 = sn.SimulationConfiguration(
name="blob_fmax",
max_frequency_in_hertz=f_max,
event_configuration=ec,
model_configuration=sn.ModelConfiguration(
background_model=None, volume_models="blob"
),
elements_per_wavelength=2.0,
)
# Homogeneous - meshed at 1.5 * f_max.
s1 = sn.SimulationConfiguration(
name="homo_fmax_1.5",
max_frequency_in_hertz=1.5 * f_max,
event_configuration=ec,
model_configuration=sn.ModelConfiguration(
background_model=sn.model.background.homogeneous.IsotropicAcoustic(
rho=rho.min(), vp=vp.min()
),
),
elements_per_wavelength=2.0,
)
for s in [s0, s1]:
p.add_to_project(s, overwrite=True)
# Interpolate.
m2m = interpolate_mesh_to_mesh(
p.simulations.get_mesh("blob_fmax"),
p.simulations.get_mesh("homo_fmax_1.5"),
use_layers=False,
use_1d_vertical_coordinate=False,
)
# Visualize.
m2m
[2024-03-15 09:14:32,773] INFO: Creating mesh. Hang on. [2024-03-15 09:14:33,217] INFO: Creating mesh. Hang on.
<salvus.mesh.unstructured_mesh.UnstructuredMesh at 0x7fb483d51750>
if "blob_fmax_1.5" not in p.simulations.list():
p.add_to_project(
sn.UnstructuredMeshSimulationConfiguration(
name="blob_fmax_1.5", unstructured_mesh=m2m, event_configuration=ec
)
)
for name in ["blob_fmax", "blob_fmax_1.5", "homo_fmax_1.5"]:
p.simulations.launch(
simulation_configuration=name,
events=p.events.list(),
site_name=SALVUS_FLOW_SITE_NAME,
ranks_per_job=1,
)
p.simulations.query(block=True)
[2024-03-15 09:14:33,537] INFO: Submitting job ... Uploading 1 files... 🚀 Submitted job_2403150914652257_b3cd507a04@local
[2024-03-15 09:14:34,411] INFO: Submitting job ... Uploading 1 files... 🚀 Submitted job_2403150914415123_d78c50d0e7@local
[2024-03-15 09:14:35,428] INFO: Submitting job ... Uploading 1 files... 🚀 Submitted job_2403150914431648_2f84ab32e6@local
blob_fmax
runs are essentially identical, while the homogeneous run is very different. The small differences in the two blob runs are expected due to the different mesh resolutions and the broadband nature of the source wavelet.p.viz.waveforms(
event="event_0000",
receiver_name="XX.XX",
data=["blob_fmax", "blob_fmax_1.5", "homo_fmax_1.5"],
receiver_field="phi",
)
[]
# Spherical coordinates
lat = np.linspace(-5.0, 5.0, 101)
lon = np.linspace(-5.0, 5.0, 101)
dep = np.linspace(0.0, 660e3, 101)
# Gaussian
xx, yy, zz = np.meshgrid(lat, lon, dep, indexing="xy")
g = np.zeros_like(xx)
for lats in lat[25:-25:25]:
for lons in lon[::25]:
g += np.exp(-(((xx - lats) ** 2 + (yy - lons) ** 2) / (2 * 0.5**2)))
# Xarray dataset
ds = xr.Dataset(
coords={"latitude": lat, "longitude": lon, "depth": dep},
data_vars={
"vp": (["latitude", "longitude", "depth"], g * 20, {"units": "%"}),
},
attrs={
"geospatial_lon_units": "degrees",
"geospatial_lat_units": "degrees_north",
"geospatial_vertical_units": "m",
},
)
ds_mantle = ds.copy()
ds_mantle["vp"] *= -1
# Salvus wrapper.
mc = sn.model.volume.seismology.CrustalModel(name="crust", data=ds)
mm = sn.model.volume.seismology.MantleModel(name="mantle", data=ds)
# Plot depth slice.
mm.ds.vp.isel(depth=0).plot()
<matplotlib.collections.QuadMesh at 0x7fb47be43210>
d = sn.domain.dim3.SphericalChunkDomain(
lat_center=0.0,
lon_center=0.0,
lat_extent=5.0,
lon_extent=5.0,
radius_in_meter=6371e3,
)
# Add mantle and crustal model.
p = sn.Project.from_domain("proj_3d", d, True)
for m in [mc, mm]:
p.add_to_project(m, overwrite=True)
s = sn.simple_config.source.seismology.SideSetVectorPoint3D(
fr=1e10,
ft=0.0,
fp=0.0,
latitude=-2.5,
longitude=-2.5,
depth_in_m=0.0,
side_set_name="r1",
)
r = sn.simple_config.receiver.seismology.SideSetPoint3D(
latitude=2.5,
longitude=2.5,
fields=["velocity"],
station_code="XX",
network_code="XX",
side_set_name="r1",
)
p.add_to_project(sn.EventCollection.from_sources(sources=s, receivers=r))
p_min = 50.0
# Common event configuration.
ec = sn.EventConfiguration(
wavelet=sn.simple_config.stf.Ricker(center_frequency=1 / (2 * p_min)),
waveform_simulation_configuration=sn.WaveformSimulationConfiguration(
end_time_in_seconds=600.0
),
)
# Heterogeneous - meshed at f_max.
s0 = sn.SimulationConfiguration(
name="blobs",
tensor_order=2,
max_depth_in_meters=660e3,
min_period_in_seconds=p_min,
event_configuration=ec,
model_configuration=sn.ModelConfiguration(
background_model=sn.model.background.one_dimensional.BuiltIn(
name="prem_iso_one_crust"
),
volume_models=["mantle", "crust"],
),
elements_per_wavelength=2.0,
)
# 1D only - meshed at a slightly lower resolution.
s1 = sn.SimulationConfiguration(
name="1d",
tensor_order=2,
max_depth_in_meters=660e3,
min_period_in_seconds=p_min,
event_configuration=ec,
model_configuration=sn.ModelConfiguration(
background_model=sn.model.background.one_dimensional.BuiltIn(
name="prem_iso_one_crust"
),
),
elements_per_wavelength=1.5,
)
for s in [s0, s1]:
p.add_to_project(s, overwrite=True)
p.viz.nb.simulation_setup("blobs")
[2024-03-15 09:14:36,793] INFO: Creating mesh. Hang on.
Interpolating model: mantle.
Interpolating model: crust.
<salvus.mesh.unstructured_mesh.UnstructuredMesh at 0x7fb47bbd4fd0>
use_layers
and use_1d_vertical_coordinate
to True
. This ensures that the interpolation only happens between layers are consistent with each other (i.e. discontinuities are preserved) and that any topography and bathymetry will be flattened before the interpolation occurs.# Interpolate.
m2m = interpolate_mesh_to_mesh(
p.simulations.get_mesh("blobs"),
p.simulations.get_mesh("1d"),
use_layers=True,
use_1d_vertical_coordinate=True,
)
# Assert mesh is different.
assert m2m.nelem != p.simulations.get_mesh("blobs").nelem
# Visualize.
m2m
[2024-03-15 09:14:38,338] INFO: Creating mesh. Hang on.
<salvus.mesh.unstructured_mesh.UnstructuredMesh at 0x7fb47c0135d0>
p.add_to_project(
sn.UnstructuredMeshSimulationConfiguration(
name="blobs_reinterp", unstructured_mesh=m2m, event_configuration=ec
)
)
for name in ["blobs", "blobs_reinterp", "1d"]:
p.simulations.launch(
simulation_configuration=name,
events=p.events.list(),
site_name=SALVUS_FLOW_SITE_NAME,
ranks_per_job=1,
)
p.simulations.query(block=True)
[2024-03-15 09:14:39,032] INFO: Submitting job ... Uploading 1 files... 🚀 Submitted job_2403150914035673_9929eb2455@local
[2024-03-15 09:15:02,680] INFO: Submitting job ... Uploading 1 files... 🚀 Submitted job_2403150915684986_117c991edc@local
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p.viz.waveforms(
event="event_0000",
receiver_name="XX.XX",
data=["blobs", "blobs_reinterp", "1d"],
receiver_field="velocity",
)
[]